Violin plots for the patterns of type X_XXZ_ZZN whereX=A

Violin plots for the patterns of type X_XXZ_ZZN whereX=C

Violin plots for the patterns of type X_XXZ_ZZN whereX=G

Violin plots for the patterns of type X_XXZ_ZZN whereX=T

Cluster Heptameric pattern Gene name/symbol Reference for the gene name Number of genes MSA(ClustalW format) MSA(Fasta format) Synonymous site conservation plot Sequence logo Codon logo
A_AAA_AAA_1 A_AAA_AAA insM' Ecogene 517 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAA_27 A_AAA_AAA evgS Ecogene 65 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAA_34 A_AAA_AAA yegX Ecogene 64 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAA_58 A_AAA_AAA yehI Ecogene 56 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAA_59 A_AAA_AAA fimC Ecogene 329 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAA_60 A_AAA_AAA yghT Ecogene 52 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAA_64 A_AAA_AAA yihL Ecogene 54 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAA_84 A_AAA_AAA yecT Ecogene 38 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAC_1 A_AAA_AAC insA4 Ecogene 2303 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAC_42 A_AAA_AAC ygcR Ecogene 64 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAC_51 A_AAA_AAC yidL Ecogene 61 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAC_55 A_AAA_AAC cadB Ecogene 127 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAC_63 A_AAA_AAC yhiJ Ecogene 44 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAG_12 A_AAA_AAG gadW Ecogene 64 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAG_25 A_AAA_AAG ECs1801 (tail assembly chaperone) NC_002695 53 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAG_2 A_AAA_AAG insC Ecogene 618 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAG_36 A_AAA_AAG tdcR Ecogene 63 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAG_37 A_AAA_AAG insJ Ecogene 74 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAG_38 A_AAA_AAG yrhB Ecogene 46 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAG_3 A_AAA_AAG ECs4535 (hypothetical protein) NC_002695 573 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAG_4 A_AAA_AAG insC Ecogene 604 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAG_5 A_AAA_AAG - - 59 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAA_AAG_6 A_AAA_AAG dnaX Ecogene 198 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAG_GGA_2 A_AAG_GGA ECs1123 (tail fiber protein) NC_002695 91 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAG_GGA_9 A_AAG_GGA pliG Ecogene 80 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAG_GGC_1 A_AAG_GGC ECs1759 (exonuclease) NC_002695 58 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAG_GGG_15 A_AAG_GGG ecpR Ecogene 63 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAG_GGG_20 A_AAG_GGG tdcR Ecogene 63 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAG_GGG_2 A_AAG_GGG ECs1123 (tail fiber protein) NC_002695 91 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
A_AAG_GGT_15 A_AAG_GGT yaiS Ecogene 49 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
C_CCT_TTA_12 C_CCT_TTA hcaR Ecogene 48 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
C_CCT_TTC_14 C_CCT_TTC pqqL Ecogene 56 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
C_CCT_TTC_18 C_CCT_TTC cirA Ecogene 91 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
C_CCT_TTG_12 C_CCT_TTG yecT Ecogene 38 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
C_CCT_TTT_11 C_CCT_TTT ybcH Ecogene 61 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
C_CCT_TTT_16 C_CCT_TTT ynbD Ecogene 60 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
G_GGA_AAG_10 G_GGA_AAG yjcZ Ecogene 67 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
G_GGA_AAG_1 G_GGA_AAG insB1 Ecogene 1609 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
G_GGA_AAG_3 G_GGA_AAG rhsD Ecogene 260 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
G_GGA_AAG_4 G_GGA_AAG - - 74 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTA_AAG_11 T_TTA_AAG yidL Ecogene 61 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTA_AAG_15 T_TTA_AAG - - 13 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTA_AAG_6 T_TTA_AAG evgS Ecogene 65 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTA_AAG_9 T_TTA_AAG yjcO Ecogene 64 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTA_AAT_10 T_TTA_AAT kch Ecogene 79 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTA_AAT_10 T_TTA_AAT kch Ecogene 79 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTA_AAT_14 T_TTA_AAT hdeB Ecogene 104 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTA_AAT_15 T_TTA_AAT evgS Ecogene 65 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTA_AAT_15 T_TTA_AAT evgS Ecogene 65 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTA_AAT_30 T_TTA_AAT rpoS Ecogene 181 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTA_AAT_36 T_TTA_AAT yhbX Ecogene 62 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTA_AAT_46 T_TTA_AAT ydjK Ecogene 68 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTA_AAT_49 T_TTA_AAT yehI Ecogene 56 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTA_AAT_56 T_TTA_AAT gfcC Ecogene 47 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTA_AAT_58 T_TTA_AAT yehM Ecogene 53 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTC_CCA_20 T_TTC_CCA ydhT Ecogene 66 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTC_CCA_22 T_TTC_CCA bcsE Ecogene 104 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTT_TTC_42 T_TTT_TTC yegX Ecogene 63 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTT_TTC_53 T_TTT_TTC ybcH Ecogene 61 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTT_TTC_57 T_TTT_TTC yddA Ecogene 53 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTT_TTC_60 T_TTT_TTC yjfK Ecogene 82 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTT_TTC_69 T_TTT_TTC yfaA Ecogene 106 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTT_TTC_72 T_TTT_TTC yliE Ecogene 46 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTT_TTC_74 T_TTT_TTC dosP Ecogene 48 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTT_TTC_83 T_TTT_TTC frvR Ecogene 43 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTT_TTC_87 T_TTT_TTC ECs4747 (hypothetical protein) NC_002695 29 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTT_TTT_29 T_TTT_TTT fadK Ecogene 75 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTT_TTT_31 T_TTT_TTT pyrL Ecogene 69 MSA MSA Syn_cons_plot Sequence_logo Codon_logo
T_TTT_TTT_52 T_TTT_TTT ymfA Ecogene 26 MSA MSA Syn_cons_plot Sequence_logo Codon_logo