Supplementary Dataset 1

Supplementary Dataset 2

Download the entire dataset (alignments, synonymous site conservation plots and sequence logos) as a gzipped file

Cluster Mechanism Number of genes Patterns (PRF) Patterns (PTR) Alignment Synplot Sequence logo
1 PTR 470 TTTTAAAAAAA(414), Unknown(56) 1 1 1
2 +1 PRF 573 CTT_TGA(564), CTT_TAA(9) 2 2 2
3 PTR 21 CCCCCTTTTT(21) 3 3 3
4 Unknown 198 4 4 N/A
5 -1 PRF/PTR 96 A_AAA_AAG(89), A_AAA_AAA(1) AAAAGGGGGG(90), AAAAAGGGGG(4), AAAAAGGGGGG(1) 5 5 5a, 5b
6 PTR 58 TTTTTAAAAAA(19), TTTAAAAAAA(13), AAAAAAA(9), AAAAAAGGGG(6), AAAAAGGGGG(5), TTTTAAAAAAA(2), TTTAAAAA(1), TTTTAAAAA(1), TTTTAAAAAA(1), TTTTTAAAAA(1) 6 6 6
7 PTR 180 AAAAAAA(85), AAAAAAAA(59), AAAAAAGGG(14), AAAAAGGGG(8), TTTAAAAAAAA(5), AAAAAAAGG(1), TTAAAAAAAA(1), TTTAAAAAAA(1) 7 7 7
8 -1 PRF 2099 A_AAA_AAC(2032), A_AAA_AAA(2) 8 8 8
9 -1 PRF 40 A_AAA_AAC(5), A_AAA_AAA(34) 9 9 9
10 PTR 259 AAAAAAA(159), AAAAAAAA(84), AAAAAAAAA(7), AAAAAAAAAA(1), TTTTTTT(1) 10 10 10
11 -1 PRF 167 A_AAA_AAG(159), TCA_AAG(8) 11 11 11
12 PTR 47 TTAAAAAAAAA(24), AAAAAAAAA(17), TTAAAAAAAA(2) 12 12 12
13 -1 PRF 794 G_GGA_AAG(409), A_AAA_AAG(105), A_AAA_AAC(78), CGA_AAG(55), G_GTA_AAA(47), A_AAA_AAA(42), CAA_AAA(27), G_GGA_AAC(13), G_GGA_AAC(8) 13 13 13
15 -1 PRF/PTR 12 A_AAA_AAG(10) AAAAAAAAA(11) 15 15 15
16 PTR 15 GGGGGAAAAAAAGG(9) 16 16 16
17 +1 PRF/PTR 11 CCC_TGA(10) TTTTTTTCCC(1), TTTTTCCCCC(7), Unknown(3) 17 17 17
18 -1 PRF 857 G_GGA_AAG(407), A_AAA_AAA(204), A_AAA_AAG(156), A_AAA_AAC(42), CGA_AAG(26), G_GGA_AAA(7) 18 18 18
19 -1 PRF 390 A_AAA_AAG(337), A_AAA_AAA(38) 19 19 19
20 -1 PRF 111 A_AAA_AAG(104), A_AAA_AAA(7) 20 20 20
21 PTR 228 AAAAAGGGGG(100), AAAAGGGGGG(33), AAAAAAGGGG(25), AAAAAAA(17), AAAAAGGGGGG(13), AAAGGGGGGG(12), AAAAGGGGG(8), AAAGGGGG(4), AAAGGGGGG(4), AAAAAAGGGGG(3), AAGGGGGGG(3), AAAAAAAGGGGG(2), AAGGGGGG(2), AAAAAAGGGGGG(1), AAAAAGGGGGGG(1) 21 21 21
22 -1 PRF/PTR 9 A_AAA_AAA(9) AAAAAAAAA(9) 22 22 22
23 PTR 6 TTAAAAAAAA(6) 23 N/A 23
24 PTR 180 TTAAAAAA(125), TTAAAAAAA(27), TTTTAAAAAAA(22), TTTAAAAAAA(2), AAAAAAA(1), TTAAAAAAAA(1) 24 24 24
25 PTR 12 TTTTTTT(10), TTTTTTTT(1) 25 25 25
26 -1 PRF/PTR 5 A_AAA_AAC(5) TTAAAAAAAAA(4), TTAAAAAAAA(1) 26 26 26
27 -1 PRF/PTR 22 A_AAA_AAG(14), A_AAA_AAC(6) AAAAAAAAA(20), AAAAAAAA(1) 27 27 27
28 Unknown 7 28 28 N/A
29 PTR 272 AAAAGGGGGG(129), AAAAAAGGGG(92), AAGGGGGGG(11), AAAAAAAA(10), AAAAAGGGGGG(9), AAAAAAGGG(5), AAAAAAA(4), AAAAAGGGGG(4), AAAGGGGGG(4), AAGGGGGG(2), AAAAAAGGGGG(1) 29 29 29
31 -1 PRF 21 A_AAA_AAG(20), A_AAA_AAA(1) 31 31 31
33 -1 PRF 11 A_AAA_AAG(6), A_AAA_AAA(5) 33 33 33
34 -1 PRF/PTR 5 A_AAA_AAG(4) AAAAAAAAAA(4), AAAAAAA(1) 34 34 34
35 -1 PRF 279 A_AAA_AAG(185) A_AAA_AAA(46) 35 35 35
36 -1 PRF/PTR 9 A_AAA_AAC(6), Unknown(3) Unknown(3), AAAAAAAA(6) 36 36 36
37 PTR 305 AAAAGGGGGG(130), AAAAAAGGGG(90), AAAAAGGGGGG(22), AAAAGGGGG(19), AAGGGGGGG(11), AAAAAAA(6), AAAAAAAA(6), AAAGGGGGG(6), AAAAAGGGGG(4), AAAAAAGGGGGGG(2), AAGGGGGG(2), AAAAAAAGG(1), AAAAAAGGGGGG(1), AAAAAGGGG(1), AAAGGGGG(1) 37 37 37
38 PTR 246 AAAAAGGGGG(94), AAAAGGGGGG(23), AAAAAAGGGG(21), AAAAAGGGGGG(21), AAAAAGGGGGGG(19), AAAAAAGGGGG(18), AAAGGGGGGG(12), AAAAAAGGG(7), AAAGGGGGG(6), AAAAGGGGG(5), TTTTAAAAAA(5), AAGGGGGGG(4), AAAAGGGG(3), AAGGGGGG(3), AAAAAAAGGGGG(2), AAAAAAGGGGGG(1), AAAAAGGGG(1) 38 38 38
39 PTR 15 AAAAAAAAA(10), AAAAAAAA(5) 39 39 39
40 PTR 6 TTTTAAAAAAA(6) 40 40 40
42 -1 PRF 292 A_AAA_AAA(184), A_AAA_AAG(97), CGA_AAG(2), G_GGA_AAG(2), A_AAA_AAC(1) 42 42 42
43 PTR 3 TTTTTTTT(3) 43 N/A 43
44 Unknown 9 44 44 N/A
45 Unknown 56 45 45 N/A
46 PTR 129 AAAAAGGGGG(85), AAAAAAA(21), AAAAAAAA(13), AAAAAAGGGGG(2), AAAAAAGGGGGG(2), AAAAAGGGGGG(2), AAAAGGGGGG(2), AAAAGGGGG(1), AAAGGGGG(1) 46 46 46
47 PTR 116 AAAAAAAGGGG(105), AAAAAGGGGGG(4), AAAAAAGGGG(1), AAAAAGGGGG(1), AAAGGGGG(1) 47 47 47
49 PTR 3 AAAAAAAAAAAAA(3) 49 N/A 49
54 -1 PRF 6 A_AAA_AAA(4), A_AAA_AAC(1) 54 54 54
58 -1 PRF/PTR 4 A_AAA_AAA(3) AAAAAAAAA(3), AAAAAAA(1) 58 58 58
60 PTR 163 AAAAAGGGGG(87), AAAAGGGGGG(30), AAAAAAGGGG(12), AAAGGGGGG(10), AAAAGGGGG(9), AAGGGGGGG(4), AAAGGGGG(2), AAAAAGGGGGG(2), TTTTAAAAAA(1), AAAAAGGGG(1), AAAAAAGGGGGG(1), AAAAAAGGGGG(1), AAAAAAAGGGGG(1), AAAAAAA(1) 60 60 60
62 PTR 4 TTTTAAAAAAA(4) 62 62 62
63 Unknown 19 63 63 N/A