Observation of dually decoded regions of the human genome using ribosome profiling data

R scripts for computing the CSCPD and PTS

Sub-codon profiles

RefSeq mRNA ID Gene Name
NM_004152 OAZ1
NM_001172437 PEG10
NM_000169 GLA
NM_000404 GLB1
NM_001065 TNFRSF1A
NM_002518 NPAS2
NM_002695 POLR2E
NM_004846 EIF4E2
NM_006764 IFRD2
NM_006923 SDF2
NM_006965 ZNF24
NM_014180 MRPL22
NM_018170 RPRD1A
NM_018838 NDUFA12
NM_020382 SETD8
NM_032375 AKT1S1
NM_001134479 LRRC8D
NM_002250 KCNN4
NM_002346 LY6E
NM_002668 PLP2
NM_003860 BANF1
NM_004635 MAPKAPK3
NM_005094 SLC27A4
NM_005698 SCAMP3
NM_005837 POP7
NM_006856 ATF7
NM_006868 RAB31
NM_014153 ZC3H7A
NM_015957 APIP
NM_016468 COX16
NM_016556 PSMC3IP
NM_016828 OGG1
NM_019026 TMCO1
NM_020182 PMEPA1
NM_024947 PHC3
NM_030573 THAP7
NM_032231 FAM96A
NM_152653 UBE2E2
NM_153713 LIX1L
NM_203413 C17orf81
NM_001006109 C3orf37
NM_001012507 CENPW
NM_001033112 PAIP2
NM_001042510 ZNF706
NM_001080497 MEGF9
NM_001136262 ATXN7L3B
NM_000421 KRT10
NM_000883 IMPDH1
NM_002117 HLA-C
NM_004322 BAD
NM_014761 IST1
NM_016558 SCAND1
NM_022044 SDF2L1
NM_022455 NSD1
NM_022455 C11orf48
NM_024348 DCTN3
NM_138558 PPP1R8
NM_181353 ID1
NM_001002244 ANAPC11
NM_001011667 CHCHD7
NM_001114752 CD55
NM_001135861 PHPT1
NM_003721 RFXANK
NM_004849 ATG5
NM_007145 ZNF146
NM_015085 RAP1GAP2
NM_032237 SGK196
NM_153273 IP6K1
NM_001031806 ALDH3A2
NM_001032280 TFAP2A
NM_001037540 SCML1
NM_001098801 FAM210A
NM_001145316 DSN1
NM_001145678 KIAA0825
NM_001163790 PTBP3
NM_004010 DMD
NM_001025248 DUT
NM_005001 NDUFA7
NM_001003408 ABLIM1
NM_001001330 REEP3
NM_020548 DBI
NM_024066 ERI3
NM_053052 SNAP47
NM_198400 NEDD4
NM_006808 SEC61B
NM_012235 SCAP
NM_018983 GAR1
NM_031892 SH3KBP1
NM_006936 SUMO3
NM_001127211 KIAA1598
NM_018179 ATF7IP
NM_000285 PEPD
NM_006701 TXNL4A
NM_018268 WDR41
NM_007350 PHLDA1
NM_002599 PDE2A
NM_018361 AGPAT5
NM_199229 RPE
NM_052848 CCDC97
NM_031299 CDCA3
NM_172373 ELF1
NM_018489 ASH1L
NM_004486 GOLGA2
NM_014903 NAV3
NM_022170 EIF4H
NM_016640 MRPS30
NM_013354 CNOT7
NM_005953 MT2A